PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c13_21530V3.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family E2F/DP
Protein Properties Length: 218aa    MW: 23972.4 Da    PI: 8.4771
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c13_21530V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.21e-2641122371
             E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         +k+Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i k +k++i+wkg
  Pp3c13_21530V3.4.p  41 GKGLRHFSMK---VCEKVESkGRTTYNEVADELVAEftnpdsphvspdqqqyDEKNIRRRVYDALNVLMAVGIILK-DKKDIQWKG 122
                         79********...*****999*******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-4436127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-3339122IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.09E-2142123IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.7E-2542122IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011383.0E-5129212IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.33E-17129191No hitNo description
PfamPF087816.9E-13130190IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVSNGIDARL SHLDDPDSPD AEVIGGKKKR GGRAGGGEKG GKGLRHFSMK VCEKVESKGR  60
TTYNEVADEL VAEFTNPDSP HVSPDQQQYD EKNIRRRVYD ALNVLMAVGI ILKDKKDIQW  120
KGFPSASLDD VADLKAESMR IRGRIERKSA YLHELQSQMT GLRNLVSRNE RLSQGNNSVP  180
HVALPFILVQ VYCQLLPELV RPICSILVSA SVCLCTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-4033127193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13036GGRAGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.155870.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5473420.0AB547342.1 Physcomitrella patens DP;3 RNA for DP transcription factor;3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001765239.11e-107predicted protein, partial
SwissprotQ9FNY22e-74DPB_ARATH; Transcription factor-like protein DPB
TrEMBLG1UDG11e-123G1UDG1_PHYPA; DP transcription factor2
STRINGPP1S74_252V6.11e-126(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-67Transcription factor DP